This open access book describes the results of natural language processing and machine learning methods applied to clinical text from electronic patient records. It is divided into twelve chapters. Chapters 1-4 discuss the history and background of the original paper-based patient records, their purpose, and how they are written and structured. These initial chapters do not require any technical or medical background knowledge. The remaining eight chapters are more technical in nature and describe various medical classifications and terminologies such as ICD diagnosis codes, SNOMED CT, MeSH, UMLS, and ATC. Chapters 5-10 cover basic tools for natural language processing and information retrieval, and how to apply them to clinical text. The difference between rule-based and machine learning-based methods, as well as between supervised and unsupervised machine learning methods, are also explained. Next, ethical concerns regarding the use of sensitive patient records for research purposes are discussed, including methods for de-identifying electronic patient records and safely storing patient records. The book’s closing chapters present a number of applications in clinical text mining and summarise the lessons learned from the previous chapters. The book provides a comprehensive overview of technical issues arising in clinical text mining, and offers a valuable guide for advanced students in health informatics, computational linguistics, and information retrieval, and for researchers entering these fields.
This work was published by Saint Philip Street Press pursuant to a Creative Commons license permitting commercial use. All rights not granted by the work's license are retained by the author or authors.
Topics in this book include: • Clinical Documents in Electronic Health Records • Summarization Techniques for Online Health Data • Natural Language Processing for Text Mining • Query Expansion Techniques for Tweets • Online Video ...
Text Mining Investigation of Scale Assessment Within Clinical Trials
Measures of Model Interpretability for Model Selection André Carrington1(B), Paul Fieguth1, and Helen Chen2 1 Systems Design Engineering, University of ... Keywords: Support vector Model machines interpretability · Kernels · Model ...
1987, 1994) led by Naomi Sager at New York University was one of the earliest attempts to formulate comprehensive semantic and syntactic rules to parse clinical text. Later, Friedman and her colleagues (1994) developed a clinical NLP ...
This accessible book, written by a sociologist and a computer scientist, surveys the fast-changing landscape of data sources, programming languages, software packages, and methods of analysis available today.
The aim of clinical text mining is to extract information from clinical text, hence bridging the gap between structured and unstructured information and allowing access to more data (Spasic et al. 2014). In the healthcare setting, ...
This book studies health outcomes research using data mining techniques"--Provided by publisher.
... Mark Craven, Laurie Damianos, Marcelo Fiszman, Noemie Elhadad, John Ely, Carol Friedman, Ken Fukuda, Bob Futrelle, Aaron Gabow, Rob Gaizauskas, Graciela Gonzalez, Jorg Hakenberg, Marti Hearst, Larry Hunter, Helen Johnson, Cem Kaner, ...
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